Here's 1.2. I made the Admin area work better, as now the categories are mixed with boards as they appear on the BoardIndex. Make sure to check what files to upload, as I added one (Load.pl).
The best part, though, is the ability to add a file ($templatesdir/$template/$template.def) to change the menu def for that template. This affect isn't limited to just Board Templates, either, so it should be fairly useful. I found a way to merge the two defs together, so if you don't have a string in the template .def, it's loaded from the forum default.
Here's the entry from the modfile:
1.2 (YaBB 2.0/2.1): Changed the arrangement of boards and categories in the Admin section to match the view on the Board Index. Added the ability to use a different .def file with a template. (December 8th, 2005)
Oh, and about the smilie sets: The ability to handle that is in CVS as of today, so that won't be in this mod.